Projects

Available Projects


T-Rex Fossil Series

Introduction

Can you find other T.Rex peptides in the chicken proteome?

Can you find T. rex peptides in the human proteome?

Can you find T. rex peptides in a random database?

How many out of 48,000 spectra can be reliably interpreted?

Can you find collagen-like peptides in the T. rex sample without using databases?


Comparative Proteogenomics Series

Introduction

Finding Motifs for Post-Translational Modifications (PTMs)

Structural Analysis of Post-Translational Modification and Proteolytic Cleavage Sites

Improving Signal Peptide Predictions with Mass Spectrometry Data

Analysis of Conserved Post-Translational Modifications

Sequence-based Prediction of Peptide Detectability

Annotating Bacterial Genomes Using Mass Spectrometry Data (multiple projects)

Proteogenomic Browser

Ongoing Projects

Using mass-spectrometry for operon prediction and validation

Computational Prediction of N-terminal Methionine Cleavage

eQTL analysis correlating allelic regions to gene expression

Comparative genomic analysis of novel start candidates in C. elegans

Completed Projects


Following papers were published during the first stage of the consortium: